AustralieFrV1, Main, Exploration, bibRecord, 008315

Genome Sequences of Three Agrobacterium Biovars Help Elucidate the Evolution of Multichromosome Genomes in Bacteria

Identifieur interne : 008315 ( Main/Exploration ); précédent : 008314; suivant : 008316

Genome Sequences of Three Agrobacterium Biovars Help Elucidate the Evolution of Multichromosome Genomes in Bacteria

Auteurs : Steven C. Slater [États-Unis] ; Barry S. Goldman [États-Unis] ; Brad Goodner [États-Unis] ; Joao C. Setubal [États-Unis] ; Stephen K. Farrand [États-Unis] ; Eugene W. Nester [États-Unis] ; Thomas J. Burr [États-Unis] ; Lois Banta [États-Unis] ; Allan W. Dickerman [États-Unis] ; Ian Paulsen [Australie] ; Leon Otten [France] ; Garret Suen [États-Unis] ; Roy Welch [États-Unis] ; Nalvo F. Almeida [États-Unis, Brésil] ; Frank Arnold [États-Unis] ; Oliver T. Burton [États-Unis] ; ZIJIN DU [États-Unis] ; Adam Ewing [États-Unis] ; Eric Godsy [États-Unis] ; Sara Heisel [États-Unis] ; Kathryn L. Houmiel [États-Unis] ; Jinal Jhaveri [États-Unis] ; JING LU [États-Unis] ; Nancy M. Miller [États-Unis] ; Stacie Norton [États-Unis] ; QIANG CHEN [États-Unis] ; Waranyoo Phoolcharoen [États-Unis] ; Victoria Ohlin [États-Unis] ; Dan Ondrusek [États-Unis] ; Nicole Pride [États-Unis] ; Shawn L. Stricklin [États-Unis] ; JIAN SUN [États-Unis] ; Cathy Wheeler [États-Unis] ; Lindsey Wilson [États-Unis] ; HUIJUN ZHU [États-Unis] ; Derek W. Wood [États-Unis]

Source :

Journal of bacteriology [ 0021-9193 ] ; 2009.

RBID : Pascal:09-0182285

Descripteurs français

Pascal (Inist)
- Agrobacterium, Séquence nucléotide, Génome, Microbiologie.

English descriptors

KwdEn :
- Agrobacterium, Genome, Microbiology, Nucleotide sequence.

Abstract

The family Rhizobiaceae contains plant-associated bacteria with critical roles in ecology and agriculture. Within this family, many Rhizobium and Sinorhizobium strains are nitrogen-fixing plant mutualists, while many strains designated as Agrobacterium are plant pathogens. These contrasting lifestyles are primarily dependent on the transmissible plasmids each strain harbors. Members of the Rhizobiaceae also have diverse genome architectures that include single chromosomes, multiple chromosomes, and plasmids of various sizes. Agrobacterium strains have been divided into three biovars, based on physiological and biochemical properties. The genome of a biovar I strain, A. tumefaciens C58, has been previously sequenced. In this study, the genomes of the biovar II strain A. radiobacter K84, a commercially available biological control strain that inhibits certain pathogenic agrobacteria, and the biovar III strain A. vitis S4, a narrow-host-range strain that infects grapes and invokes a hypersensitive response on nonhost plants, were fully sequenced and annotated. Comparison with other sequenced members of the Alphaproteobacteria provides new data on the evolution of multipartite bacterial genomes. Primary chromosomes show extensive conservation of both gene content and order. In contrast, secondary chromosomes share smaller percentages of genes, and conserved gene order is restricted to short blocks. We propose that secondary chromosomes originated from an ancestral plasmid to which genes have been transferred from a progenitor primary chromosome. Similar patterns are observed in select Beta- and Gammaproteobacteria species. Together, these results define the evolution of chromosome architecture and gene content among the Rhizobiaceae and support a generalized mechanism for second-chromosome formation among bacteria.

Url:

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2668409

Affiliations:

Le document en format XML

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</placeName>
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<sourceDesc><biblStruct><analytic><title xml:lang="en" level="a">Genome Sequences of Three Agrobacterium Biovars Help Elucidate the Evolution of Multichromosome Genomes in Bacteria</title>
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<author><name sortKey="Goldman, Barry S" sort="Goldman, Barry S" uniqKey="Goldman B" first="Barry S." last="Goldman">Barry S. Goldman</name>
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</author>
<author><name sortKey="Goodner, Brad" sort="Goodner, Brad" uniqKey="Goodner B" first="Brad" last="Goodner">Brad Goodner</name>
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</author>
<author><name sortKey="Setubal, Joao C" sort="Setubal, Joao C" uniqKey="Setubal J" first="Joao C." last="Setubal">Joao C. Setubal</name>
<affiliation wicri:level="1"><inist:fA14 i1="04"><s1>Department of Computer Science, Virginia Polytechnic Institute and State University</s1>
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<sZ>4 aut.</sZ>
</inist:fA14>
<country>États-Unis</country>
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</affiliation>
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</affiliation>
</author>
<author><name sortKey="Farrand, Stephen K" sort="Farrand, Stephen K" uniqKey="Farrand S" first="Stephen K." last="Farrand">Stephen K. Farrand</name>
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<country>États-Unis</country>
<wicri:noRegion>Department of Microbiology, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801</wicri:noRegion>
</affiliation>
</author>
<author><name sortKey="Nester, Eugene W" sort="Nester, Eugene W" uniqKey="Nester E" first="Eugene W." last="Nester">Eugene W. Nester</name>
<affiliation wicri:level="4"><inist:fA14 i1="07"><s1>Department of Microbiology, University of Washington</s1>
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<author><name sortKey="Burr, Thomas J" sort="Burr, Thomas J" uniqKey="Burr T" first="Thomas J." last="Burr">Thomas J. Burr</name>
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<author><name sortKey="Banta, Lois" sort="Banta, Lois" uniqKey="Banta L" first="Lois" last="Banta">Lois Banta</name>
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<sZ>8 aut.</sZ>
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<country>États-Unis</country>
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</affiliation>
</author>
<author><name sortKey="Dickerman, Allan W" sort="Dickerman, Allan W" uniqKey="Dickerman A" first="Allan W." last="Dickerman">Allan W. Dickerman</name>
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<country>États-Unis</country>
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<author><name sortKey="Paulsen, Ian" sort="Paulsen, Ian" uniqKey="Paulsen I" first="Ian" last="Paulsen">Ian Paulsen</name>
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<s3>AUS</s3>
<sZ>10 aut.</sZ>
</inist:fA14>
<country>Australie</country>
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</affiliation>
</author>
<author><name sortKey="Otten, Leon" sort="Otten, Leon" uniqKey="Otten L" first="Leon" last="Otten">Leon Otten</name>
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<country>France</country>
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</author>
<author><name sortKey="Suen, Garret" sort="Suen, Garret" uniqKey="Suen G" first="Garret" last="Suen">Garret Suen</name>
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<sZ>12 aut.</sZ>
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</affiliation>
</author>
<author><name sortKey="Welch, Roy" sort="Welch, Roy" uniqKey="Welch R" first="Roy" last="Welch">Roy Welch</name>
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<sZ>12 aut.</sZ>
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<author><name sortKey="Almeida, Nalvo F" sort="Almeida, Nalvo F" uniqKey="Almeida N" first="Nalvo F." last="Almeida">Nalvo F. Almeida</name>
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<country>États-Unis</country>
<wicri:noRegion>Blacksburg, Virginia 24060</wicri:noRegion>
</affiliation>
<affiliation wicri:level="1"><inist:fA14 i1="13"><s1>Department of Computing and Statistics, Federal University of Mato Grosso do Sul</s1>
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<country>Brésil</country>
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<author><name sortKey="Arnold, Frank" sort="Arnold, Frank" uniqKey="Arnold F" first="Frank" last="Arnold">Frank Arnold</name>
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<country>États-Unis</country>
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</affiliation>
</author>
<author><name sortKey="Burton, Oliver T" sort="Burton, Oliver T" uniqKey="Burton O" first="Oliver T." last="Burton">Oliver T. Burton</name>
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<sZ>8 aut.</sZ>
<sZ>16 aut.</sZ>
</inist:fA14>
<country>États-Unis</country>
<wicri:noRegion>Williamstown, Massachusetts 01267</wicri:noRegion>
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</author>
<author><name sortKey="Zijin Du" sort="Zijin Du" uniqKey="Zijin Du" last="Zijin Du">ZIJIN DU</name>
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<country>États-Unis</country>
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</affiliation>
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<author><name sortKey="Ewing, Adam" sort="Ewing, Adam" uniqKey="Ewing A" first="Adam" last="Ewing">Adam Ewing</name>
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<sZ>3 aut.</sZ>
<sZ>15 aut.</sZ>
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<country>États-Unis</country>
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<author><name sortKey="Godsy, Eric" sort="Godsy, Eric" uniqKey="Godsy E" first="Eric" last="Godsy">Eric Godsy</name>
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<series><title level="j" type="main">Journal of bacteriology</title>
<title level="j" type="abbreviated">J. bacteriol.</title>
<idno type="ISSN">0021-9193</idno>
<imprint><date when="2009">2009</date>
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<seriesStmt><title level="j" type="main">Journal of bacteriology</title>
<title level="j" type="abbreviated">J. bacteriol.</title>
<idno type="ISSN">0021-9193</idno>
</seriesStmt>
</fileDesc>
<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Agrobacterium</term>
<term>Genome</term>
<term>Microbiology</term>
<term>Nucleotide sequence</term>
</keywords>
<keywords scheme="Pascal" xml:lang="fr"><term>Agrobacterium</term>
<term>Séquence nucléotide</term>
<term>Génome</term>
<term>Microbiologie</term>
</keywords>
</textClass>
</profileDesc>
</teiHeader>
<front><div type="abstract" xml:lang="en">The family Rhizobiaceae contains plant-associated bacteria with critical roles in ecology and agriculture. Within this family, many Rhizobium and Sinorhizobium strains are nitrogen-fixing plant mutualists, while many strains designated as Agrobacterium are plant pathogens. These contrasting lifestyles are primarily dependent on the transmissible plasmids each strain harbors. Members of the Rhizobiaceae also have diverse genome architectures that include single chromosomes, multiple chromosomes, and plasmids of various sizes. Agrobacterium strains have been divided into three biovars, based on physiological and biochemical properties. The genome of a biovar I strain, A. tumefaciens C58, has been previously sequenced. In this study, the genomes of the biovar II strain A. radiobacter K84, a commercially available biological control strain that inhibits certain pathogenic agrobacteria, and the biovar III strain A. vitis S4, a narrow-host-range strain that infects grapes and invokes a hypersensitive response on nonhost plants, were fully sequenced and annotated. Comparison with other sequenced members of the Alphaproteobacteria provides new data on the evolution of multipartite bacterial genomes. Primary chromosomes show extensive conservation of both gene content and order. In contrast, secondary chromosomes share smaller percentages of genes, and conserved gene order is restricted to short blocks. We propose that secondary chromosomes originated from an ancestral plasmid to which genes have been transferred from a progenitor primary chromosome. Similar patterns are observed in select Beta- and Gammaproteobacteria species. Together, these results define the evolution of chromosome architecture and gene content among the Rhizobiaceae and support a generalized mechanism for second-chromosome formation among bacteria.</div>
</front>
</TEI>
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Genome Sequences of Three Agrobacterium Biovars Help Elucidate the Evolution of Multichromosome Genomes in Bacteria

Genome Sequences of Three Agrobacterium Biovars Help Elucidate the Evolution of Multichromosome Genomes in Bacteria

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